IQ-TREE multicore version 2.0.3 for Linux 64-bit built Apr 26 2020
Developed by Bui Quang Minh, Nguyen Lam Tung, Olga Chernomor,
Heiko Schmidt, Dominik Schrempf, Michael Woodhams.

Host:    cn47 (AVX2, FMA3, 125 GB RAM)
Command: /home/smg655/.conda/envs/iqtree/bin/iqtree -t All_Species_m2_three_prime_UTR.nwk -s All_Species_m2_three_prime_UTR.nexus --scf 100 --prefix concord_three_prime_UTR -T 2
Seed:    709257 (Using SPRNG - Scalable Parallel Random Number Generator)
Time:    Wed Apr  7 14:12:02 2021
Kernel:  AVX+FMA - 2 threads (2 CPU cores detected)

Reading alignment file All_Species_m2_three_prime_UTR.nexus ... Nexus format detected
Alignment has 26 sequences with 15148 columns, 9973 distinct patterns
14913 parsimony-informative, 0 singleton sites, 235 constant sites
WARNING: Some sequence names are changed as follows:
ActMar  TC -> ActMar__TC
AldGig  TC -> AldGig__TC
ApaSpi  TT -> ApaSpi__TT
BatTri  TC -> BatTri__TC
CarIns  TC -> CarIns__TC
CheAbi  TC -> CheAbi__TC
CheMyd  TC -> CheMyd__TC
CheSer  NN -> CheSer__NN
ChrPic  TC -> ChrPic__TC
CuoAmb  TC -> CuoAmb__TC
CuoMcc  TC -> CuoMcc__TC
DerCor  TC -> DerCor__TC
DerMaw  AC -> DerMaw__AC
EmyOrb  NN -> EmyOrb__NN
EmySub  TA -> EmySub__TA
GopAga  TC -> GopAga__TC
MalTer  TC -> MalTer__TC
MauRee  TC -> MauRee__TC
MesTub  TA -> MesTub__TA
PelCas  TA -> PelCas__TA
PelSin  TT -> PelSin__TT
PlaMeg  TC -> PlaMeg__TC
PodExp  TA -> PodExp__TA
SteCar  AC -> SteCar__AC
TerCar  TC -> TerCar__TC
TraScr  TC -> TraScr__TC

            Gap/Ambiguity  Composition  p-value
   1  ActMar__TC    1.60%    passed     48.31%
   2  AldGig__TC    1.96%    passed     70.10%
   3  ApaSpi__TT    2.86%    passed     81.10%
   4  BatTri__TC   50.92%    passed     39.28%
   5  CarIns__TC    8.27%    passed     14.64%
   6  CheAbi__TC    6.59%    passed     79.98%
   7  CheMyd__TC    0.89%    passed     53.27%
   8  CheSer__NN    4.01%    passed     62.59%
   9  ChrPic__TC    0.43%    passed     64.88%
  10  CuoAmb__TC    2.91%    passed     15.64%
  11  CuoMcc__TC    0.94%    passed      6.84%
  12  DerCor__TC    1.21%    passed     23.55%
  13  DerMaw__AC    2.63%    passed     82.78%
  14  EmyOrb__NN   41.85%    passed     28.32%
  15  EmySub__TA    1.99%    passed     10.72%
  16  GopAga__TC    1.02%    passed     93.18%
  17  MalTer__TC    6.14%    passed     51.37%
  18  MauRee__TC    0.81%    passed     12.91%
  19  MesTub__TA    3.85%    failed      1.11%
  20  PelCas__TA    4.75%    failed      0.13%
  21  PelSin__TT    3.74%    passed     73.17%
  22  PlaMeg__TC    0.73%    passed     61.44%
  23  PodExp__TA   10.32%    failed      0.00%
  24  SteCar__AC    2.88%    passed     33.71%
  25  TerCar__TC    1.87%    passed     68.54%
  26  TraScr__TC    0.85%    passed     43.66%
WARNING: 1 sequences contain more than 50% gaps/ambiguity
****  TOTAL         6.39%  3 sequences failed composition chi2 test (p-value<5%; df=3)
Reading tree All_Species_m2_three_prime_UTR.nwk ...
un-rooted tree with 26 taxa and 49 branches
Computing site concordance factor...
0.149 sec
Tree with concordance factors written to concord_three_prime_UTR.cf.tree
Annotated tree (best viewed in FigTree) written to concord_three_prime_UTR.cf.tree.nex
Tree with branch IDs written to concord_three_prime_UTR.cf.branch
Concordance factors per branch printed to concord_three_prime_UTR.cf.stat
Date and Time: Wed Apr  7 14:12:02 2021
